API Access

Programatic access to data managed by SeqCMD is possible by leveraging SeqCMD's REST API.

SeqCMD API Key

Application API keys (client_credentials grant) can be retrieved by calling the SeqCMD's OAuth2 endpoint. When an Application Key is first generated the user requesting the key will authorize the request using their username and password. Upon successful authorization the user will be provided with a token that grants temporary access to REST endpoints. When the token expires the user can use the refresh token to request a new token for continued access. SeqCMD provides python and R packages that simplify token management and lifecycle.

Example Authorization Flow

This is coming soon...

Example API Call

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